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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs9837435 chr3:101021599 C/T 0.000194 407 15.63 15.13 11.7 KM Plot
LGG rs9865431 chr3:156351718 T/A 6.42E-5 399 15.63 13.7 5.83 KM Plot
LGG rs9869642 chr3:100844145 C/T 0.000191 407 16.6 14.6 12.17 KM Plot
LGG rs9885279 chr5:156032330 A/G 2.6E-5 407 16.67 14.43 11.17 KM Plot
LGG rs9918142 chr5:94033169 T/G 4.32E-5 407 14.78 17.63 9.8 KM Plot
LGG rs9922085 chr16:67397580 G/C 6.04E-5 406 15.25 16.42 16.55 KM Plot
LGG rs9922119 chr16:67411530 T/C 5.99E-5 407 15.25 15.17 16.55 KM Plot
LGG rs9922476 chr16:67478924 A/G 9.13E-6 406 15.2 15.25 19.2 KM Plot
LGG rs9925393 chr16:67780829 C/T 2.16E-11 407 15.17 18.37 6.47 KM Plot
LGG rs9928374 chr16:67811930 A/G 2.66E-11 407 6.47 13.2 15.33 KM Plot
LGG rs9929258 chr16:67441248 A/G 6.24E-5 406 15.25 16.42 16.55 KM Plot
LGG rs9931704 chr16:67411728 A/G 5.99E-5 407 15.25 15.17 16.55 KM Plot
LGG rs9933102 chr16:67538910 A/G 8.45E-6 407 15.37 13.63 19.2 KM Plot
LGG rs9934636 chr16:67831454 C/T 1.12E-11 406 15.17 17.77 6.47 KM Plot
LGG rs9936306 chr16:67455559 C/T 9.53E-6 405 15.2 15.33 19.2 KM Plot